PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001253.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CAMTA
Protein Properties Length: 1045aa    MW: 117155 Da    PI: 6.2636
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001253.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.37.1e-54461594116
                     CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                              e + rwlk+ e++ iL+n+e+h++++e++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ e+l+cyYah+
  Itr_sc001253.1_g00002.1  46 EaQGRWLKPAEVLFILQNHENHQIAHEPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGSAEALNCYYAHG 131
                              4489********************************************************************************** PP

                     CG-1  89 eenptfqrrcywlLeeelekivlvhyle 116
                              e+np+fqrr+yw+L+ ++e+ivlvhy++
  Itr_sc001253.1_g00002.1 132 EQNPNFQRRSYWMLDPAYEHIVLVHYRD 159
                              **************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.67140166IPR005559CG-1 DNA-binding domain
SMARTSM010767.9E-7643161IPR005559CG-1 DNA-binding domain
PfamPF038596.8E-4747159IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.6E-10457544IPR013783Immunoglobulin-like fold
CDDcd001021.52E-7460544No hitNo description
PfamPF018333.9E-10460543IPR002909IPT domain
SuperFamilySSF812963.36E-19460544IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.202.6E-14659751IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.194659751IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-15663753IPR020683Ankyrin repeat-containing domain
CDDcd002041.12E-12664751No hitNo description
PfamPF127962.9E-6679752IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.713692724IPR002110Ankyrin repeat
SMARTSM002480.0045692721IPR002110Ankyrin repeat
SMARTSM002483800731760IPR002110Ankyrin repeat
SMARTSM0001515809831IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.858810839IPR000048IQ motif, EF-hand binding site
SMARTSM000156.4866888IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638867896IPR000048IQ motif, EF-hand binding site
PfamPF006120.016869887IPR000048IQ motif, EF-hand binding site
SMARTSM00015120909931IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1045 aa     Download sequence    Send to blast
MLMYFNLMEG NRVVQDEPSF GSSLTAHEAL IIRFHNGYNF SDLIREAQGR WLKPAEVLFI  60
LQNHENHQIA HEPPQKPGSG SLFLFNKRVL RFFRKDGHSW RRKRDGRTVG EAHERLKVGS  120
AEALNCYYAH GEQNPNFQRR SYWMLDPAYE HIVLVHYRDI SELICPVYGC LYFTCLSVNV  180
YAICSGCKTQ GRQTTGFMSQ FSPVSSTSSQ SPSPYSTQYA GSSVVVNESF EPYSSPGSVE  240
ISSHAATTSN GISQSSVREG VDEVSSSSAR EMSLALRKLE EQLSLNDDSF KEIDPLYNDI  300
DNSDGVQNIL DDHRTFTRMP EDSNSLLLQQ HSGYLSEHNH QIPGYEVDPW KEALEGDGNY  360
LDSKLYGKYV YTDDKNMLLA REPVETPENM WFNFDGKEAQ NHSITIPQQV EDFKYPLYSP  420
AVNTYRTDPI QYTTLFNQGQ IGISLEADLG LTIAQKQKFT IKEISPDWGY ATAATKVVII  480
GSFLCDPSES EWVCMFGDVE VPVQIIQEGV IRCQAPPHLP GKVNLCITTG NRESCSEVRE  540
FEYRVESTSK INSTVPETQC TNKSPEELLL LIRFGQMLLS DGSNGKIDSS GLGNDYLEKV  600
KAGEDSWSQV IEALLVGSST PNLTIDWFLQ ELLKDKLQQW IFSKFQGKTN SSDCMLSRKE  660
QGIIHMVAGL GFEWALHPIL NAGVSVNFRD IAGWTALHWA ARFGREKMVA ALIASGASAG  720
AVTDPTKQDP IGKTPAAIAA NCGHKGLAGY LSEVALTSHL SSLTLEESEL SKGSADVEAE  780
KTIVSVSTTS ATTNEDELSL KHTLAAVRNA AQAAARIQSA FRAHSFRKRQ QKEVVSFAAG  840
DEYYTLSNDI QGLSAASKLA FRSTRDYNSA ALAIQKKYRG WKGRKDFLTF RQKVVKIQVL  900
SLPPFLYSLS KFYAIHVYAH VRGYQVRKQY KVCWAVGVLE KVVLRWRRRG VGLRGFRHET  960
DSIDETEDED ILKVFRKQKV DATIDEAVSR VLSMVESPEA RQQYHRILEK YRQAKAELQG  1020
VETEATSSHD PSISSMENDD IYQYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553914.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLH8ZRY30.0H8ZRY3_SOLLC; Calmodulin-binding transcription factor SR2L
STRINGSolyc12g035520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains